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Human disease related genes
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UMAP gene cluster
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Subclass
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
13
14
15
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
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Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
BIOMEDICAL RESEARCH
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174 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ACTA1
ENSSSCG00000010190
ENSG00000143632
Actin, alpha skeletal muscle
Tissue enriched
Detected in some
skeletal muscle:
1900.3
ACTC1
ENSSSCG00000004803
ENSG00000159251
Actin, alpha cardiac muscle 1
Tissue enriched
Detected in some
heart:
271.3
ACTN2
ENSSSCG00000010144
ENSG00000077522
Alpha-actinin-2
Group enriched
Detected in many
heart:
140.1
skeletal muscle:
224.2
ADAMTSL5
ENSSSCG00000013433
ENSG00000185761
ADAMTS like 5
Tissue enhanced
Detected in many
heart:
40.7
ADPRHL1
ENSSSCG00000024103
ENSG00000153531
ADP-ribosylhydrolase like 1
Group enriched
Detected in some
heart:
62.6
skeletal muscle:
16.9
ALPK2
ENSSSCG00000004918
ENSG00000198796
Alpha kinase 2
Group enriched
Detected in some
heart:
41.9
skeletal muscle:
21.0
ANKRD1
ENSSSCG00000010461
ENSG00000148677
Ankyrin repeat domain-containing protein 1
Tissue enriched
Detected in some
heart:
216.2
ANKRD23
ENSSSCG00000008200
ENSG00000163126
Ankyrin repeat domain-containing protein 23
Group enriched
Detected in some
heart:
31.1
skeletal muscle:
108.6
ANKRD39
ENSSSCG00000035533
ENSG00000213337
Ankyrin repeat domain 39
Group enriched
Detected in all
heart:
56.6
skeletal muscle:
123.9
ART3
ENSSSCG00000008976
ENSG00000156219
Ecto-ADP-ribosyltransferase 3 precursor
Group enriched
Detected in some
heart:
41.0
skeletal muscle:
38.0
testis:
37.7
ASB10
ENSSSCG00000029241
ENSG00000146926
Ankyrin repeat and SOCS box containing 10
Tissue enhanced
Detected in some
heart:
26.0
skeletal muscle:
45.9
ASB11
ENSSSCG00000012133
ENSG00000165192
Ankyrin repeat and SOCS box protein 11 isoform a
Group enriched
Detected in some
ductus deferens:
23.4
epididymis:
19.8
heart:
29.6
skeletal muscle:
51.5
ASB12
ENSSSCG00000032889
ENSG00000198881
Ankyrin repeat and SOCS box containing 12
Tissue enhanced
Detected in some
heart:
8.8
skeletal muscle:
43.3
testis:
12.5
ASB15
ENSSSCG00000016606
ENSG00000146809
Ankyrin repeat and SOCS box containing 15
Group enriched
Detected in some
heart:
55.5
mouth:
14.1
skeletal muscle:
45.2
ASB2
ENSSSCG00000002467
ENSG00000100628
Ankyrin repeat and SOCS box containing 2
Group enriched
Detected in many
heart:
61.9
skeletal muscle:
119.2
ASB4
ENSSSCG00000015333
ENSG00000005981
Ankyrin repeat and SOCS box containing 4
Group enriched
Detected in some
heart:
21.9
liver:
30.6
pituitary gland:
17.2
skeletal muscle:
30.3
ATP1B4
ENSSSCG00000012606
ENSG00000101892
Protein ATP1B4
Group enriched
Detected in some
heart:
22.4
skeletal muscle:
79.0
AVIL
ENSSSCG00000029571
ENSG00000135407
Advillin
Tissue enhanced
Detected in all
skeletal muscle:
39.6
BVES
ENSSSCG00000004366
ENSG00000112276
Blood vessel epicardial substance
Tissue enhanced
Detected in many
heart:
27.4
male glands:
20.3
skeletal muscle:
28.5
smooth muscle:
22.7
BZW2
ENSSSCG00000023118
ENSG00000136261
Basic leucine zipper and W2 domain-containing protein 2
Tissue enhanced
Detected in all
heart:
53.5
skeletal muscle:
61.8
C10orf71
ENSSSCG00000033489
ENSG00000177354
Chromosome 10 open reading frame 71
Group enriched
Detected in some
heart:
41.6
skeletal muscle:
112.6
C19orf47
ENSSSCG00000027016
ENSG00000160392
Chromosome 19 open reading frame 47
Tissue enhanced
Detected in all
heart:
38.4
skeletal muscle:
62.6
CARNS1
ENSSSCG00000012911
ENSG00000172508
Carnosine synthase 1
Tissue enhanced
Detected in many
liver:
32.7
skeletal muscle:
46.1
vagus nerve:
25.5
CASQ2
ENSSSCG00000006745
ENSG00000118729
Calsequestrin 2
Tissue enriched
Detected in many
heart:
100.4
CAV3
ENSSSCG00000040643
ENSG00000182533
Caveolin-3
Tissue enhanced
Detected in some
heart:
35.4
skeletal muscle:
41.0
synovial tissue:
10.2
CEP85
ENSSSCG00000026731
ENSG00000130695
Centrosomal protein 85
Tissue enhanced
Detected in all
heart:
36.1
skeletal muscle:
50.6
testis:
59.8
CKM
ENSSSCG00000036132
ENSG00000104879
Creatine kinase M-type
Tissue enriched
Detected in some
skeletal muscle:
470.7
CKMT2
ENSSSCG00000014128
ENSG00000131730
Creatine kinase S-type, mitochondrial
Group enriched
Detected in many
heart:
107.9
skeletal muscle:
228.0
CMYA5
ENSSSCG00000026098
ENSG00000164309
Cardiomyopathy-associated protein 5
Group enriched
Detected in some
heart:
72.9
skeletal muscle:
198.1
COL20A1
ENSSSCG00000037260
ENSG00000101203
Collagen type XX alpha 1 chain
Tissue enhanced
Detected in some
ductus deferens:
12.1
epididymis:
10.3
COQ8A
ENSSSCG00000010861
ENSG00000163050
Coenzyme Q8A
Tissue enhanced
Detected in all
heart:
66.9
male glands:
57.2
skeletal muscle:
138.1
CORO6
ENSSSCG00000017792
ENSG00000167549
Coronin 6
Tissue enriched
Detected in many
skeletal muscle:
101.5
COX7A1
ENSSSCG00000037792
ENSG00000161281
Cytochrome c oxidase subunit 7A1, mitochondrial
Tissue enhanced
Detected in all
heart:
61.1
skeletal muscle:
66.1
COX8H
ENSSSCG00000014560
COX8H protein
Tissue enhanced
Detected in some
heart:
116.6
male glands:
58.9
mouth:
53.1
skeletal muscle:
265.2
CSRP3
ENSSSCG00000013354
ENSG00000129170
Cysteine and glycine-rich protein 3
Tissue enhanced
Detected in some
heart:
197.1
mouth:
44.4
skeletal muscle:
37.6
synovial tissue:
67.7
DAPK2
ENSSSCG00000021588
ENSG00000035664
Death-associated protein kinase 2
Tissue enhanced
Detected in all
heart:
30.1
DCAF6
ENSSSCG00000006303
ENSG00000143164
DDB1 and CUL4 associated factor 6
Tissue enhanced
Detected in all
skeletal muscle:
99.3
DHRS7C
ENSSSCG00000017996
ENSG00000184544
Dehydrogenase/reductase 7C
Tissue enhanced
Detected in some
heart:
30.9
skeletal muscle:
56.4
DUSP27
ENSSSCG00000006311
ENSG00000198842
Dual specificity phosphatase 27, atypical
Group enriched
Detected in some
heart:
19.4
skeletal muscle:
44.7
ENO3
ENSSSCG00000017904
ENSG00000108515
Beta-enolase
Tissue enriched
Detected in many
skeletal muscle:
421.4
FAM189A2
ENSSSCG00000005249
ENSG00000135063
Family with sequence similarity 189 member A2
Tissue enriched
Detected in many
thyroid gland:
101.3
FBXO40
ENSSSCG00000011885
ENSG00000163833
F-box protein 40
Group enriched
Detected in some
heart:
65.5
skeletal muscle:
68.8
FEM1A
ENSSSCG00000037153
ENSG00000141965
Fem-1 homolog A
Tissue enhanced
Detected in all
skeletal muscle:
127.7
FITM1
ENSSSCG00000002007
ENSG00000139914
Fat storage-inducing transmembrane protein 1
Group enriched
Detected in many
heart:
21.6
skeletal muscle:
47.1
FSD2
ENSSSCG00000001806
ENSG00000186628
Fibronectin type III and SPRY domain containing 2
Group enriched
Detected in some
heart:
37.7
skeletal muscle:
48.3
GCM2
ENSSSCG00000035562
ENSG00000124827
Glial cells missing homolog 2
Low tissue specificity
Detected in many
GPAT3
ENSSSCG00000009233
ENSG00000138678
Glycerol-3-phosphate acyltransferase 3
Tissue enhanced
Detected in many
kidney:
34.6
testis:
27.6
GPR157
ENSSSCG00000033456
ENSG00000180758
G protein-coupled receptor 157
Tissue enhanced
Detected in many
heart:
23.8
skeletal muscle:
55.1
GZMM
ENSSSCG00000032810
ENSG00000197540
Granzyme M precursor
Tissue enhanced
Detected in many
lymphoid tissue:
16.2
skeletal muscle:
9.7
HRC
ENSSSCG00000003156
ENSG00000130528
Histidine rich calcium binding protein
Group enriched
Detected in some
heart:
69.8
skeletal muscle:
92.0
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